The Ascalaph Designer application was developed for molecular models and simulations. Using this application you can simulate, molecular graphics, optimization, molecular dynamics, quantum chemistry.
Two cameras per model
CPK, Wire frame,...
|License: Freeware||Size: 72 MB||Download (46): Ascalaph Designer Download|
The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to manipulate molecular models of nucleic acids based on a set of reduced co-ordinates developed at Los Alamos National Laboratory and the Max Planck Institute for Biophysical Chemistry.
|License: Freeware||Size: 1.09 MB||Download (16): NAMOT-Nucleic Acid MOdelling Tool Download|
The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,...
|License: Freeware||Size: 1.3 MB||Download (17): Molecular Dynamics Model Download|
Ascalaph Graphics is a handy, easy-to-use program designed to provide a graphical interface of the system. The program includes the window interface and three-dimensional graphics of molecular models.
Ascalaph Graphics shows molecular models in separate windows. Each window has two cameras,...
|License: Freeware||Size: 16.2 MB||Download (44): Ascalaph Graphics Download|
View molecules and proteins in MOL or PDB format in stunning 3D and smoothness on Windows Phone! This app lets you upload your own MOL and PDB files through SkyDrive or download PDB files through the RCSB's PDB database. Currently, the 3D engine has support for simple molecules, protein...
Platforms: Windows Phone
|License: Freeware||Size: 2 MB||Download (9): Molecular Models Download|
Amira is a powerful, multifaceted software platform for visualizing, manipulating, and understanding Life Science and bio-medical data coming from all types of sources and modalities. Amira is the leading software solution that satisfies even your most demanding needs to work with clinical or...
|License: Shareware||Cost: $0.00 USD||Size: 175 MB||Download (30): Amira Download|
Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...
|License: Freeware||Size: 829.44 KB||Download (19): Hidden Markov Models for Molecular Motors Download|
The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small...
|License: Freeware||Size: 1.3 MB||Download (16): Molecular Dynamics Demonstration Model Download|
gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.
|License: Freeware||Size: 40.21 MB||Download (18): gMol Download|
PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.
Platforms: Mac, BSD, Linux
|License: Freeware||Size: 7.07 MB||Download (27): psicode Download|
The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and...
Platforms: Windows, Mac, *nix, Python, BSD Solaris
|License: Freeware||Download (31): The Python Macromolecular Library Download|
The WCDMA Physical Layer Demo consists of an end-to-end (transmitter-to-receiver) simulation of the Frequency Division Duplex (FDD) Downlink physical layer for several Dedicated Channels (DCH) as specified by the 3GPP standard (Release 99).The current ZIP file includes three different models:...
|License: Freeware||Size: 1.29 MB||Download (24): WCDMA FDD Simulink Models Download|
This ZIP file contains functions that permits the path loss calculation, using one of the two models of COST231:- Hata model with COST231 extension to the working frequency;- COST231-Walfish/Ikegami model
|License: Freeware||Size: 10 KB||Download (25): COST231 models Download|
This ZIP file contains function that provide simulation of the following models:- Free space loss calculation- Reflection quantization in generic surfaces for vertical and horizontal polarizations- Plane Earth loss calculations, and- Calculation of the Divergence factor in spherical Earth
|License: Freeware||Size: 10 KB||Download (20): Basic radiowave propagation models Download|
This model simulates a CDMA2000 1xRTT Forward link (between Base Station and Mobile Station).In particular, it simulates the Radio Configuration 3 of a Forward Fundamental channel.The block CDMA2k: Initial settings allows you to set different parameters such as data rate, Power ControlSubChannel...
|License: Freeware||Size: 102.4 KB||Download (19): CDMA2000 Downlink Simulink Models Download|
Hata and COST231-Hata Propagation Models. Two functions and two test scripts (with plots).
|License: Freeware||Size: 10 KB||Download (25): Hata and COST231-Hata Models Download|
This ZIP file contains 5 Simulink models that were used in the July 2004 MATLAB Digest article "Recommendations for Creating Accurate Linearized Models in Simulink". These models highlight several modeling methodologies that can cause problems with linearization. They are intended to be used with...
|License: Freeware||Size: 30.72 KB||Download (18): Linearization Example Models Download|
ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...
|License: Freeware||Size: 286.72 KB||Download (18): ORMA (Oligonucleotide Retrieving for Molecular Applications) Download|
This demo implements the Active Contour Models as proposed by Kass et al.To run it with GUI 1. Type guide on the matlab prompt. 2. Click on "Go to Existing GUI" 3. Select the snk.fig file in the same directory as this file 4. Click the green arrow at the top to launch the GUI Once the GUI has...
|License: Shareware||Cost: $0.00 USD||Size: 327.68 KB||Download (18): Snakes: Active Contour Models Download|
Several functions for evaluating the exact negative log-likelihood of ARMA models in O(n) time using the Kalman Filter.
|License: Shareware||Cost: $0.00 USD||Size: 10 KB||Download (18): Exact Negative Log-likelihood of ARMA models via Kalman Filtering Download|