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Molecular Models software
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Molecular Models

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Released: August 06, 2012  |  Added: August 06, 2012 | Visits: 342

Ascalaph Designer The Ascalaph Designer application was developed for molecular models and simulations. Using this application you can simulate, molecular graphics, optimization, molecular dynamics, quantum chemistry. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame,...



Platforms: Windows

License: Freeware Size: 72 MB Download (46): Ascalaph Designer Download

Added: November 14, 2013 | Visits: 206

NAMOT-Nucleic Acid MOdelling Tool The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to manipulate molecular models of nucleic acids based on a set of reduced co-ordinates developed at Los Alamos National Laboratory and the Max Planck Institute for Biophysical Chemistry.





Platforms: *nix

License: Freeware Size: 1.09 MB Download (16): NAMOT-Nucleic Acid MOdelling Tool Download

Added: November 13, 2013 | Visits: 277

Molecular Dynamics Model The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,...


Platforms: Mac

License: Freeware Size: 1.3 MB Download (17): Molecular Dynamics Model Download

Released: August 01, 2012  |  Added: August 01, 2012 | Visits: 260

Ascalaph Graphics Ascalaph Graphics is a handy, easy-to-use program designed to provide a graphical interface of the system. The program includes the window interface and three-dimensional graphics of molecular models. Ascalaph Graphics shows molecular models in separate windows. Each window has two cameras,...


Platforms: Windows

License: Freeware Size: 16.2 MB Download (44): Ascalaph Graphics Download

Released: June 01, 2012  |  Added: June 01, 2012 | Visits: 150

Molecular Models View molecules and proteins in MOL or PDB format in stunning 3D and smoothness on Windows Phone! This app lets you upload your own MOL and PDB files through SkyDrive or download PDB files through the RCSB's PDB database. Currently, the 3D engine has support for simple molecules, protein...


Platforms: Windows Phone

License: Freeware Size: 2 MB Download (9): Molecular Models Download

Released: July 07, 2012  |  Added: July 07, 2012 | Visits: 270

Amira Amira is a powerful, multifaceted software platform for visualizing, manipulating, and understanding Life Science and bio-medical data coming from all types of sources and modalities. Amira is the leading software solution that satisfies even your most demanding needs to work with clinical or...


Platforms: Windows

License: Shareware Cost: $0.00 USD Size: 175 MB Download (30): Amira Download

Added: August 14, 2013 | Visits: 264

Hidden Markov Models for Molecular Motors Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...


Platforms: Matlab

License: Freeware Size: 829.44 KB Download (19): Hidden Markov Models for Molecular Motors Download

Added: July 24, 2013 | Visits: 224

Molecular Dynamics Demonstration Model The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small...


Platforms: Mac

License: Freeware Size: 1.3 MB Download (16): Molecular Dynamics Demonstration Model Download

Added: July 04, 2013 | Visits: 180

gMol gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.


Platforms: *nix

License: Freeware Size: 40.21 MB Download (18): gMol Download

Released: October 07, 2012  |  Added: October 07, 2012 | Visits: 218

psicode PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.


Platforms: Mac, BSD, Linux

License: Freeware Size: 7.07 MB Download (27): psicode Download

Added: May 10, 2013 | Visits: 230

The Python Macromolecular Library The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (31): The Python Macromolecular Library Download

Added: March 22, 2013 | Visits: 268

WCDMA FDD Simulink Models The WCDMA Physical Layer Demo consists of an end-to-end (transmitter-to-receiver) simulation of the Frequency Division Duplex (FDD) Downlink physical layer for several Dedicated Channels (DCH) as specified by the 3GPP standard (Release 99).The current ZIP file includes three different models:...


Platforms: Matlab

License: Freeware Size: 1.29 MB Download (24): WCDMA FDD Simulink Models Download

Added: March 30, 2013 | Visits: 285

COST231 models This ZIP file contains functions that permits the path loss calculation, using one of the two models of COST231:- Hata model with COST231 extension to the working frequency;- COST231-Walfish/Ikegami model


Platforms: Matlab

License: Freeware Size: 10 KB Download (25): COST231 models Download

Added: July 29, 2013 | Visits: 293

Basic radiowave propagation models This ZIP file contains function that provide simulation of the following models:- Free space loss calculation- Reflection quantization in generic surfaces for vertical and horizontal polarizations- Plane Earth loss calculations, and- Calculation of the Divergence factor in spherical Earth


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): Basic radiowave propagation models Download

Added: August 05, 2013 | Visits: 344

CDMA2000 Downlink Simulink Models This model simulates a CDMA2000 1xRTT Forward link (between Base Station and Mobile Station).In particular, it simulates the Radio Configuration 3 of a Forward Fundamental channel.The block CDMA2k: Initial settings allows you to set different parameters such as data rate, Power ControlSubChannel...


Platforms: Matlab

License: Freeware Size: 102.4 KB Download (19): CDMA2000 Downlink Simulink Models Download

Added: July 30, 2013 | Visits: 271

Hata and COST231-Hata Models Hata and COST231-Hata Propagation Models. Two functions and two test scripts (with plots).


Platforms: Matlab

License: Freeware Size: 10 KB Download (25): Hata and COST231-Hata Models Download

Added: April 05, 2013 | Visits: 287

Linearization Example Models This ZIP file contains 5 Simulink models that were used in the July 2004 MATLAB Digest article "Recommendations for Creating Accurate Linearized Models in Simulink". These models highlight several modeling methodologies that can cause problems with linearization. They are intended to be used with...


Platforms: Matlab

License: Freeware Size: 30.72 KB Download (18): Linearization Example Models Download

Added: August 12, 2013 | Visits: 273

ORMA (Oligonucleotide Retrieving for Molecular Applications) ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...


Platforms: Matlab

License: Freeware Size: 286.72 KB Download (18): ORMA (Oligonucleotide Retrieving for Molecular Applications) Download

Added: May 20, 2013 | Visits: 279

Snakes: Active Contour Models This demo implements the Active Contour Models as proposed by Kass et al.To run it with GUI 1. Type guide on the matlab prompt. 2. Click on "Go to Existing GUI" 3. Select the snk.fig file in the same directory as this file 4. Click the green arrow at the top to launch the GUI Once the GUI has...


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 327.68 KB Download (18): Snakes: Active Contour Models Download

Added: September 06, 2013 | Visits: 269

Exact Negative Log-likelihood of ARMA models via Kalman Filtering Several functions for evaluating the exact negative log-likelihood of ARMA models in O(n) time using the Kalman Filter.


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (18): Exact Negative Log-likelihood of ARMA models via Kalman Filtering Download

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